Scaffold Ga0114962_10007909

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10007909
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8045
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011484	Metagenome	290	Y
F014590	Metagenome	261	Y
F018135	Metagenome	236	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000790911	F003212	GAGG	MKDKWLVTIEIDTYDGDPAKWDWDYIFTSGDDITIIESQFKGRVLPTSEGESND*
Ga0114962_1000790916	F000821	AGGAGG	MNEEYLRAKFDLCINEAEKDLQQEEIARAIKNLERANSALSRLFGLEEDNE*
Ga0114962_1000790917	F029678	AGGAGG	MSRVIGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVSWGWEERE*
Ga0114962_1000790921	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIISSDSKLTIAVHTRANAVPDVAGRTDYESTDEGNNGGEA*
Ga0114962_1000790922	F014590	GGAGG	VRTRHLQLVSSTHSDTTNDKSDALSPYGPVRAGLTTSQTTSDQQLTELLNSLENAVANLKYKSFEVYDTLNTAIETISVALSGGTTDTVGTNLLD*
Ga0114962_1000790926	F004110	AGGA	VTELHPVIYDLVPSVANTIYRRYNKHVEKDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIKDGQPKGSSSPAEGGNLLANLIDIKNGFLKLEQEDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWQ*
Ga0114962_100079094	F018135	N/A	MTVERVRHSGAYVISDFVGEGAGEYLFTRTYYGYTIKQAKAQFKIALEGEGK*
Ga0114962_100079098	F011484	GAGG	MQELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMRERA*
Ga0114962_100079099	F007691	GAGG	MDTLEQLINEIYEDNYSHLDLIDNMGGEACACPIHTTLNTIVKYRDGKEGE*