Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10004632 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10004632 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10921
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10921

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100046322	F048735	N/A	MLMDYNGICLDQPQDTTYGISFFESVPQQFIRELTAYRLTRGEFGRRERIKLKIKLEDTQLKSPAQHMVNCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRVAMRNIQEKYGKDNSIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWDSVNRYTHKWTTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVFGWWPDSSVELTIFSKQFIQSCDIAFEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYTSSVGDVFEESIAMQLVKDCVSYGVHPRDFGLDISGDGGKMMRAIIIEWSKFNPEAMFVYPISSMGMPTDRKISSLDKRTCKEAYDRMVTEYWFAVHTAMSTRSLLGLDVEKHSQVVSELCSRLYSHRGRKVAVEKKSDMKHRLKKSPDLADSLTYSVEMLRRAGLDFTFEEEKESLDILEISDWENRLIKKKGTSEDPHSEEDMSYMSTSVDEDGF*
Ga0114962_100046323	F030662	GAGG	MKLKNPNDAIPGGLWYQYSDDQGNTYRVNGMDIPYGNSFINKIKGDMENKNVAVPENLSYLVEQQICGRIAGQYCWQEAGDAVAGIIHKFAHLGDKVASTFGINAELEKRAKNCSSCQKRREALNQVIG*
Ga0114962_100046328	F055388	N/A	MAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPNQPWQEVQSGRCVQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMSTNVNITKNVHEEFSRSNWIGGAGHKWIPISNGQSLVSCATPDDQMFIVQPFEGTNEGSFNMGYVYVKMAVSQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYIQNPAFNYADFGITNPWVNKAMIKWISPSQSGLGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACPLTPNYAPQYTPDCYACSSTISEPI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10004632

Overview

Ecosystem & Geography

Associated Families

Sequences