NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10004555

Scaffold Ga0114962_10004555


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10004555 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11018
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036693Metagenome / Metatranscriptome169Y
F070854Metagenome / Metatranscriptome122N
F071976Metagenome / Metatranscriptome121Y
F075702Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000455519F070854GAGVKKFAILWLLICANAYADVSFGTGESEDCNIAKALAVNDAIERYAEKEFEVKKQHICRERNAEGIECEYVKKTEIESAGTLKKVLSEKVKQKKDICVVEVKIELDPSRPLAGDIENASNFAYNGQKYPFDVITREPMYVYLFSVYDDKMHMMYPYDGIKSNLLHGKLTLPNGIWWQADIMSNAIESKDTLMAVFTKVKITFGSSMTRDEIYRQIASVPINARRVVYHNFVIKRRT*
Ga0114962_100045553F071976AGGAMKYRVIVNGVSFYTTGAAIKRGVGDSVGVNTVVRQLFENMFNAIGIASTMTVYDHKMNRVSYDVQISKV*
Ga0114962_100045557F075702AGGAMIQINNLTEYQVEMLDHMWSLDSVEEYEEWYNLLDDEDQQLADSLQQMIILAEMDNLMDDCKDAKELLKKFAL*
Ga0114962_100045558F036693GAGMYNKRMKPRNPIAKDVRTPKYRMRVVESKVQYIRQPKHKKDIYES*
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