Scaffold Ga0114962_10003876

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10003876
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12030
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F033405	Metagenome	177	Y
F048799	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100038763	F012016	GGA	MEQPYAWAIEEFNSDGELVWSSISKFRPTELSWIKDLPTKKHNIVLTPLYKDESKAEKITGIKSYKESTAKMIEAYNGL*
Ga0114962_100038764	F006587	GAGG	MDSNKYEGTGYIVVGFILGALLTWSIMQTIHIQKKYKMNLKCMQGELYEEIKPNFYVKSHLECFEQRSF*
Ga0114962_100038767	F033405	GGAG	MNNKVKTDEQLIEMVIQYMEKYPKATRNQVVLHATGNAERVRDLDKRGLIKLPKALPKGTNSSWGKYFHIDSRDKTFIR*
Ga0114962_100038768	F048799	AGGA	MIKSKNLLIKQGIVSGVKHRSKTIGVGAQLNVGMSLKNTHNKRRKIVADANLNNFSPEARLAIKEFEAWQHKVFAKNAKKGWRFFNPDSLDKPTPRSAKEAWGGTYNRDDSEKNETRNQKIMLVIVTVVLLILSTL*