Scaffold Ga0114962_10003113

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10003113
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13552
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F006112	Metagenome / Metatranscriptome	381	Y
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F022196	Metagenome / Metatranscriptome	215	Y
F096646	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000311312	F019477	AGGAG	MSAWEFAEFRIGRLFHCNGNDYIKQSTRTARMLSNGRVFYFGRKEIIYPIAY*
Ga0114962_1000311326	F000652	AGGAG	MKAYVTTIIRQELEVPDSWEREDVLDFLSEVQSFRTAFQGVSNEDQTARIIDLGVVEEEITELGEESFDA*
Ga0114962_1000311331	F014848	AGGAGG	MTRYYDTIVAFERDGFDIIVDKTYEDMHPRDSFDDSCHDVDEICKDIDNGQLEWFMLRVRVLVEGLELGSAYLGGCLYEDPKEILTDGTAEDFIAEAMTEAKSKVYSMYKRFQELSFNIDAEGINA*
Ga0114962_1000311335	F006112	AGGAG	MKQDYTLYIYKRDRRCKAGERLFSTTVWPGMDRDGMNRTVTELYPLYKATEGWRMEFHPVMKTVKNLMSGQEVQIRHDTPRSCDPSSELYWSM*
Ga0114962_1000311340	F096646	N/A	VAALCRFNSTLDASVLHNNIMLQDTSPREHFYTVLKYIEDNALINANAFCCS*
Ga0114962_100031137	F022196	AGGA	MTTVPKPIPSSTGGVITYTPTGLIHSAGKAYSGKIAQQEAKGK*