Scaffold Ga0114962_10002450

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10002450
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15476
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F041645	Metagenome	159	Y
F049401	Metagenome	146	N
F060551	Metagenome	132	N
F063298	Metagenome	129	N
F074409	Metagenome	119	N
F086801	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000245017	F074409	N/A	MKSPLPARPVACASNVYGKEYADYIHQPKANGWRFLFDQATGLVMNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRSAKGTIILIDAFDPANPLPISERLKLIEEIEPASYEVKANALLRMPRLDHDKLKACWAEMDYQNQKAGEVVWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW*
Ga0114962_100024502	F063298	AGGA	MSDKQTGIELKKTITLLEKAKSETVEHMGECISLAADAGDIIASARKEDADLDTILSIAGINGEQARRLERVAKARPTLSAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRSEFIDEARPIAQAYKDAGGEL*
Ga0114962_1000245022	F086801	N/A	MTGVKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIILELARLGMEDEDLCATTARDSCKRIFDMMGGIK*
Ga0114962_1000245024	F049401	GGAG	LELFIGGLKIVQRLGQKETMQKLNIAVGFAMLTLILGGVLVLSSCASTSYNYTAPAPADIPALIMEWDKLERSLGQVKPEFREQYAKALKALSNAIAEEERWRSRAENK*
Ga0114962_1000245025	F012113	N/A	MQQILTFIQSQDIFAWVGAVVALLSAVIAIASLIPGDQPEKFLQSVVDVLSKFSKK*
Ga0114962_1000245030	F041645	N/A	MATTIIGSAINTKVLKRQNFNKEINGLETLIEAYAIKTSNRVSVVPAKDTLHSAFSSASTTYTRMAVESVATEEEDGGITSMIVTYVGLTSSTGLPPAVVRLIPTAGAGVYGPPLVIEVEFVTDVTESQFASGQQATTNPAAYSGGWTTFIPMPASINGTALPVNIRKPFNNNGLVIERYYGYCADSFSCERRGLFLVAKNIYAEKQEIATIS*
Ga0114962_100024504	F060551	GGCGG	MKTDGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMQAMNPALGLDQLAKMLTQIVEETVSSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*