NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10002093

Scaffold Ga0114962_10002093


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10002093 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16924
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F009524Metagenome / Metatranscriptome316Y
F026545Metagenome197N
F048273Metagenome148N
F056415Metagenome137Y
F061658Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000209311F056415GGAGGVKVNRKSTPKMVVRPHFVSDYQRLEREARNRERFNFTVAIMALWVLGVLVFQLVNR*
Ga0114962_1000209314F004668GGAGGMSAADHIEQIHEQGWTRVDTAPMEWVAVVPNDDHTAFGGTLWRIENDGNQYAVGVTAGHPVSAALDYEAAARALAVLIKQENR*
Ga0114962_1000209317F048273GAGVLRDLWRNSGATMTPRQIDQLIERLDAHSAKLDQVRSDVDKLKGGLIVIGALLFSVLVPLIASLLAK*
Ga0114962_1000209324F009524AGGAGGVTDLTILDAIADRLASVNPPSGYTLRKVYATPPEGLPVTPAAVLFPGGDQITVGNGNRTTVLTVNCVLFILPIPRMDEKYRDLYTWRAWLRTAFDGAVTISGNAVQVAVTGTTLGTDTYADQDYLTVQATAEVTVYDTVAFTA*
Ga0114962_1000209325F061658GGAGGMAVITEPAYLDEETGMLTEIVRDAETGEIIGKNERMPEEATE*
Ga0114962_100020933F026545GGAGGMAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRIVFPGQRVLVIHEKGRRFEWRHKACVK*
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