Basic Information | |
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Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10001187 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22718 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (77.08%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000961 | Metagenome / Metatranscriptome | 820 | Y |
F005737 | Metagenome | 391 | Y |
F010821 | Metagenome | 298 | Y |
F066703 | Metagenome | 126 | Y |
F069850 | Metagenome / Metatranscriptome | 123 | Y |
F071017 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114962_1000118714 | F071017 | GGAG | MKDLLQTQSLADLKTVKNLANLSSEQRLLMQETLHQTEAKDWIRRYKKKIREEGKAEALAWWQKILSDLVKRRGQKAADDLRRRMNEIRS* |
Ga0114962_1000118716 | F066703 | GAGG | MAITKFTQQKDDSFDETLRLMCSVHGCPNRWLVHSDGEKPKCSKHQWQRTEKKPAVHSWHEVGEEF* |
Ga0114962_1000118720 | F069850 | AGGAG | MVISQISNTVQVATFVNVFYGIASLVTETKKGYAVTLLDTDAEMIVSPVRIYPVTMLDQAIAYAKKIANIKE* |
Ga0114962_1000118722 | F010821 | AGGAGG | MTDFTFFPTDFSATTILVIANTTDAKEYLAQRYGIGCVSIEVRKSAAPEFADSFEFQGLSYA* |
Ga0114962_1000118723 | F005737 | AGGA | MFDIEKYTKPTDWSQVALWVVSVAAIVVVILDVLYWRA* |
Ga0114962_1000118742 | F000961 | N/A | MMATPEIDLVKYGVLWQKVEDYERRFDQMETKIDKLELSIEKLVALANQSRGGFWMGMALVSALSSAVGYISHWVGKN* |
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