Scaffold Ga0114962_10001142

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10001142
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23160
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (86.79%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F002869	Metagenome / Metatranscriptome	524	Y
F008493	Metagenome / Metatranscriptome	332	Y
F008554	Metagenome	331	Y
F011224	Metagenome	293	Y
F017266	Metagenome	241	Y
F029756	Metagenome	187	Y
F034176	Metagenome / Metatranscriptome	175	Y
F048781	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000114218	F048781	GAG	MSGWESLQRIKRIEEQVDKLGLKFGKPKHGDWETNERSLSLVPKDHDALPMYTRDAELYIGSLEMLETWLHGVDWARNYDRMLKLSDDDKRSNAEQKQRNRNLMQSIKEGKMVTGDAE*
Ga0114962_1000114219	F029756	AGGAG	MSKRKITTRVILDGNVDHTFTQMRQVYADAVGEYVKCDRNSYHIENDSFDINYYSGKAISAKELFKDLV*
Ga0114962_1000114226	F001008	GAGG	MSKEQHKKYQWIDGETADRITSMNLKDYRAYLKKELKQWKKNPKSDSNPDGVWMHPEDVGLNVQTIAALDLIISHFPETSDEIK*
Ga0114962_1000114229	F002869	GGAG	MTNEITVEMLDRKIAWCQQNAFWGTPSAVPQVLDFYFEKTRGSVDEDWPESFSLEDLADTLGIPQVRYRIYYSQDNLTLRLFVFRPRCTWDEQKIMLDLGFVVAQDNDSNTIPNQPVEEVE*
Ga0114962_1000114233	F011224	AGGA	MYMAYFDTLGFEWIFDITDYEKKKFWAALKGNDKVDMPIPRYAILRAQANPQRFPEIWAFESDISRDELEEYARENPQVLADAIRNCGQNVFKTHKPETVIN*
Ga0114962_1000114234	F017266	N/A	MMHGRQMGKSQVNDLIRHFYANMTPIPKIKWQRLPGLKLQAYTDEVAPRGFERGLNETDMDPVQAWTTECNCGTRMSFNVWKFKNEKQITMFLIRWSS*
Ga0114962_1000114236	F008554	N/A	MNIEEEMINRAGNQMAQDIDREVLWGMLEGMGWCRVMIPTMGDAYKAVDIITWLEDNCKKAYERNGRDFIFEDSRDANWFILRWGTV*
Ga0114962_1000114239	F034176	AGGTGG	MRHNYAKQRDSDEDFEYFISKFECRIEDSREYNQHVRPSSYHQDFYDRDSFQMETKITPMKAIHLTSDNLARLVAEQEHIQHLMKDAEYGKKCWDHERRDSMVRNGNPAVEKAYQKYVMLLELCREG*
Ga0114962_1000114250	F008493	AGGAG	MTRRTPRKDCNYIIYEMTDEFGNNYIGLTRKSLPNTNKVVLERWRKHRSRARNEDRAWPLYQYLRDRLDGEWSHTVVAIVRGRAEAYAYERELVKTLQPTLNDQYCG*