Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10001037 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10001037 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24214
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (90.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24214

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (90.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F004344	Metagenome / Metatranscriptome	442	Y
F065529	Metagenome	127	Y
F065533	Metagenome	127	Y
F095129	Metagenome	105	N
F102403	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000103710	F004344	GGA	MDGLSIKTVMADGTEHQFSLRPRIIVDFEQKFGKGLAKLLGDEQKLEHIYYLGWKSLQSNGIIVKPFGGEFLDTIKSVELVSDPSSESTETL*
Ga0114962_1000103718	F102403	AGGAG	MATTSAQFSLTTSPVKIASADGQAESVHIHSETAIAYLGGDSSVSSSTGFKLDVNDKLIISNHEGELWAVSASTGTMTILIVTK*
Ga0114962_1000103719	F001937	N/A	MSSDVATIIYSYFFITAAVIAGLSYVAKHTIKTHTEAIEDKLSRIEYALYNDGKTGLINKVEELLEHQQSIKIDVEVLKAKAEAK*
Ga0114962_1000103722	F095129	GGA	LKDQSFILSSETKQAASILAKITFEKYRNNFGHYRNTANSHLVGHLGEFAAFIWLKDHGFNPSPTFLDSTKDREADILTTLARIEVKTWSEQYWQKWGRCVSVSQYESVKKKADLIFWLTVDGVESETPQATFRGWNEVGIFERMSSIMTGEVGREVRNLQLDPSQLNSMEEIKNYEQRRDPSNSD*
Ga0114962_100010373	F065529	AGGGGG	MNSLFLEGMQSAREIVQNKGLAHLDQIIKELETESIETTALDPKVETR*
Ga0114962_1000103733	F065533	AGGA	MSTEINMEMVDLDQEAQAFLNAYIEAKAKVKEWSEKADLASEQVKAAMGRSEIGLVNGREAVRWVTVETHRIDTKRIREELPADLIAKLERTTISRRFTIVGEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10001037

Overview

Ecosystem & Geography

Associated Families

Sequences