Scaffold Ga0114962_10000936

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000936
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25330
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (47.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F046245	Metagenome / Metatranscriptome	151	Y
F053886	Metagenome	140	Y
F056408	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000093610	F044299	GGAG	MNQISQYLVSIDRPPYVDGRRVGQATPCRSYGQPSWFISFYDGYTHTSDPVFTDEDGLNGAPTVREYANNLGYEPCIN*
Ga0114962_1000093611	F030663	AGGA	MYQLIFTFLVVTKAGLPGFNIEHISQFREIEDCEKTKTAMVAYMDKLVRENKMFPGVFECQKVQR*
Ga0114962_1000093612	F016374	AGG	MNKEITLTPAGGRFYRAMAFHWVTVVFVMPVLATFMIAAILNPFWFRDSMFNFVERRVNEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK*
Ga0114962_1000093624	F053886	AGGA	MSRTLIWVLSWSVLGPVPESGEQAKFKTQAECEQARVQKREEYQAQKKQIVASCHQSTK*
Ga0114962_1000093650	F046245	N/A	MWSYIITFFAVFATDLIYVYFVKSIQDNRPLMAAWWSMAVTFTASVAVINYTEDHWALIPALAGAYCGTLFGMWIKRKINGV*
Ga0114962_100009368	F056408	GGA	MQKRVKELMAQTLDEKFSHTWTTLTPADLEKFVKHFAELLIRDCADVAYRFDGLTLGQGYTIAKHIKKNYEVEE*