Scaffold Ga0114962_10000922

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000922
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25478
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029410	Metagenome / Metatranscriptome	188	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000092222	F029410	AGG	MQTFHDIDSVRIHLRDDWKNVAISVSGGADSALLAYLICSLVTDQTVHIISHNRMWKTRPWQSYDSFNVYTWLLTRFPNIRFVRHINFIAPDIEYGNIGPNLTDEYGKKVSGDNIQQRAYAEFVCHTNDVDAYYNGVTRNPRLAQFNGMLERDIERTNDNEHLEYMIHMGRVACHPFRFVDKSWVVNKYKELGIMDLFDITRSCEGEFEDINYTNYKAGQYVPICGECFWCKERTWAIEQSK*
Ga0114962_1000092224	F024484	AGTAG	MLTQTDYTVDSKLFQEACSSLPTGGMKTTINQSTGDFFYDSWVLKDEYKDTVWQTLYDSLPVPKGEARIIILDPNQCYQTHADIDDRYHLNILGEQCYLIDLVTPQLHKLVQDGIWYDMDAGVLHTATNFGRRARVQLVVRQLLKRNKLTDPVSVALASTVANADDARFIFDNTISTWLNKANKLGFINKFSYGNVTINFNIEKDKLNSLKCILPNEFKII*
Ga0114962_1000092227	F004256	AGG	MEFEYYYNHVPGEEPSRNNLIYTSLIDKKKKVFVQWYYNDTDYHQGQNEVVDPKLMEEKFHRELHFLSNMAWRNPHMVPKIIEVNVPERKIYLAINGEDFWNQAKCSVENYDNVLPDWQEQMLAILQAHKDRGWYKFSLHPSSYFIVDGKLKSINYFFTYSSNEGPISIADHASHIYSARQDIMRKQVDAMGLDWDAPQPLDKLQQLCFESFRTNYPDDFIAKAKAIYD*
Ga0114962_1000092230	F029568	N/A	MQNRYDVQDTHIVIYYKSLPKFEEARQLCLKEDNWLRHNYTEENLVVEHHTGYGVVYQTSTGKPMVMGGVFRDDRYPKNVAKMINRLYTFPEFRMKPTDMTDGFRVTCKLIDALEKVNNYDLYLITMQNRNRGGKRWWDTWVNQMAIASDNKWTLGAGYIQTCPWPVQKCWQNFVYYETTPGAFVNWNTKIIDDNEWQQLEQGK*
Ga0114962_1000092232	F043882	AGGA	MGTFYISSPELAYVHVPRTGMAMKKIISDWLKTNFDVKDAEPWMIDHPHLGMVKDRYPYAKTMTVVRNPWQRVYSLFRKISTEGYWLDWNNQTLLDLKPINEWVADYCDPDIEFNFPRWFTRFTNQVDFIHVNDENVDFVCKAETLERDFKKIKEYLNCDIPLPDISGYDHYEYKQYFNDASIKSIAKLHARDIDYFNY*