Scaffold Ga0114962_10000425

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000425
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37558
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (14.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F048306	Metagenome	148	N
F051912	Metagenome / Metatranscriptome	143	N
F076073	Metagenome	118	Y
F077278	Metagenome	117	Y
F085162	Metagenome	111	Y
F085693	Metagenome	111	N
F090373	Metagenome / Metatranscriptome	108	Y
F092035	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000042511	F085162	AGTAG	MLKKLKQIWHEIIERWFLLTFFTERMERERLQILAELVKRKDTLWKNLSVKQRTVKEILTYKEPKKKSINELVEEYEKKSPVIQDALYEALKNIQQKENGNSKETNNKD*
Ga0114962_1000042513	F076073	AGG	MAVVIDLVDQIEHMFSKEPDKRKKTEHKEWKDTINKLIQDCNKLCKFKMYFLIK*
Ga0114962_1000042523	F085693	N/A	MNTLQTTLTALQSQLESQKEASKYYYDNVFSKEVATLEASIVEWFYKFTGETYTIKIESGGETLQIYSSEADVKDMWRHNAITINYYSRYKEEAKAKLSFYSKECEYDDTKTIAYLKTLGMVAVLLNQINFMMPVWKAEYQQYAQKRYATFEQPISHTEFAIRKTEAEILEQGLASYKQAGFTHTISSRTECERQYNIDRDLEGAYTLETKPQYFDLQTGRGRYDNVRVYAFEVVGHIKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIATVYNWENFDSVKYNAKQTERYLDHMSKFTTVVEVA*
Ga0114962_1000042525	F077278	N/A	MTILQTTVDSASVGSAFMQYGILGILAFLLGYFAWQQYLRLVKKNEQLEEKIDKLQEQMLKIIVEERDRLDTLIRDNTAALQELQRTIYKYMVKSKE*
Ga0114962_100004253	F051912	N/A	MTEKEKAESMVDEFYQYTNTNSRENAKACAKIMAKEVLVKLKYYGAPQHAVEFWEETVLQIDRVPAFKD*
Ga0114962_1000042537	F090373	N/A	MLHEYTKAELNSMETIEQAWDGDELKIKTDTHRIWLVLRENRPYNGDYVVETNVDGRWEQASYYFN*
Ga0114962_100004254	F031482	N/A	MRNRYEKSPLSLIEGGSRIKITFKNGIEREYDNIKDVSAYVAKVLSESDYMINRIEMEKEVVTKEWKPLFGRHTYKSDLGNNFVNYNNYEI*
Ga0114962_1000042542	F092035	N/A	MTENFKEVQTAVDNMLNVKSYVRRKKKTQSDKKKEMFVQMINSLDEIFVRQGLMYADMDMDMFKYDEKFLAVIDIMIYFHFGEACSDVIAFYLYDRRNPDGTLNPILDDKDTEIILENPYDLWNLLVMVNPKIQD*
Ga0114962_100004259	F048306	N/A	MTKEEAEFINQLCENSAVTWTQVHIEYQKKFVDPSQWLEAGGYQKGSPLPHGNQIEGNELCKRAQTFKN*