Scaffold Ga0114962_10000265

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000265
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45498
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (70.45%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F018930	Metagenome	232	Y
F020690	Metagenome / Metatranscriptome	222	N
F022415	Metagenome / Metatranscriptome	214	Y
F034459	Metagenome	174	N
F046380	Metagenome / Metatranscriptome	151	N
F048314	Metagenome / Metatranscriptome	148	Y
F050153	Metagenome / Metatranscriptome	145	Y
F057381	Metagenome / Metatranscriptome	136	N
F059007	Metagenome	134	N
F068423	Metagenome / Metatranscriptome	124	N
F072350	Metagenome / Metatranscriptome	121	N
F074407	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100002652	F034459	AGG	MNVALIFVGISFGHKSERDFNHCFPNIDRNIIQPLKKNHSVHNYVVTYDNDRMDEVNKLLNPKKLISISFEGSHQNTTRTKASTVTGNDYIDFYIMTRFDIHYNKSLEEFNLDWDKFNITSREGNGFWESQQFVGDTFYAWPKRLHDQVVQGFNVLTNGEVKYDFNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSLCTRDYCDRLRSKIPINEEILARFP*
Ga0114962_1000026522	F020690	AGGAG	MISEIKSTDKMVSKGIYMSASAIYTHTKSAKVIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVEGKLAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP*
Ga0114962_1000026529	F048314	AGG	MMKDSIEQAAEMLILGYTEHEIVRILRIHPSMAEELIQKAEQWNDQEFVPYTEEVVDEMADYYGEE*
Ga0114962_1000026531	F015732	AGGA	MTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSASNVDEVMAKVSPQYKKVSESVQGTTATKKAQKLKEIDAFLANAPTAKGNPFAALGA*
Ga0114962_1000026533	F046380	GGAG	MSNWKTLDQSFETMSQAEALDIVQQEAVSMGMGLLETMTWMSDNYDELDSVQRNAFRTAFRGFQRLLAPVTE*
Ga0114962_1000026535	F022415	AGGAG	MSRMSELHMLITDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAV*
Ga0114962_1000026548	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPKNMTGEDIEGAYEKFAVLLINECAKKVDKVRRQGGWFYGEIIRKEFGLYDRD*
Ga0114962_1000026554	F072350	AGGAG	MQDYYKAKFTYDYDDKRMRYDVTEWDNPVNGVRLGKVVFYSDVMEECIAMAEEYNYNYKCGQEWELFNNQECEFV*
Ga0114962_1000026556	F050153	GAGG	MSKGSRARPLGVDFDKYSSNWNSVFGKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD*
Ga0114962_1000026557	F068423	GAGG	MDEDFDFNFPMEINYEKILTNNSILPMVRLLAADLMKNPYMSIGTFLQRARTDDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKGLIIADYDVMSFGEEYAHSTIAKRKP*
Ga0114962_1000026559	F057381	AGGAG	MRYFFNDVEVTATEYTDLINKSTPDVPAKFVMAIPVERAVTKPKPLPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFVTLFQLKLGDISKGNASIYLKKVKERTK*
Ga0114962_1000026577	F018930	AGAAG	MTWYANSEGRYGAKGAKGDLGEAIVEEYCKTNNILFEDRNDIISQVRLKIDCIINGIPVDVKANYYMGTLCVELFNNKKQQAGWLYTTSAKQIYGVDVDTKSIYRYNIEDMITYVSNNEHRAKKTKYDDTVIWAPVALDIIEKLQ*
Ga0114962_1000026581	F059007	AGG	MPVKVYYYIKDKDGYASEDKTYESIPEDEDGLFLWQHINKARKLAGVPRERFFIINTSCSPRKKPTWINPDWPLAPFPKLKKARLAFGRYVIEKPPEPVDPDYD*