Scaffold Ga0114962_10000131

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000131
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63273
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (53.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F023584	Metagenome	209	Y
F044299	Metagenome	154	Y
F046245	Metagenome / Metatranscriptome	151	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000013114	F046245	AGG	MLEYAVTFFAVFATDLIYVYFVKSIQDNRPLMAAWWSMAVTFTASVAVINYTADHWALIPALAGAYCGTLFGMWIKRKINVGP*
Ga0114962_1000013139	F089853	AGG	MKVASVMAPIVNSDPISGHRYQGWTPCIEWCDTNCEGPWLFVSEGVFEFEWDSDYIIFMLRWV*
Ga0114962_1000013143	F015302	N/A	MSKDEYYRDPAARLDTIIGGDTQHFLRLQRVKDEYDELAHAVPIGQGFLTFYDYVKEYYGIKLTMDGDNINLDYAVVDEKKYTVFVLKFSR*
Ga0114962_1000013154	F044299	AGG	MNQISQYLVSIDRPPYVNGRRVGQAIPCTSYGEPAWSISFYNGYTITNNPVFTDEDGLNEAPSIIEFANNLGYKPCTN*
Ga0114962_1000013195	F023584	AGG	MEKNTQQSAQQKPTATKPKRPNETSAISVEGFVKIFDPKTKETFVEKRA*