Scaffold Ga0114962_10000129

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000129
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63473
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (77.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006890	Metagenome	362	Y
F036100	Metagenome	170	Y
F050979	Metagenome	144	Y
F054678	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_10000129106	F050979	AGGA	MAAPQVHKSKRHADPFKTGTGKERLKALSLKQLYLLLEKLTEGGKKRAKIAKEIVRRTPIG*
Ga0114962_1000012947	F006890	N/A	MTPVQKEIYMIIESWWKEFGFGPTVDDVMRITGDKGRGNVSRKMWALVDLGLCKGTKTKHRSIRPSYMRLRDHE*
Ga0114962_1000012980	F054678	GAGG	MADTKKTIIVENVIVKGYIKHENGRKTIFEFNKNDFKPVAFEKIFQEVGEKF*
Ga0114962_1000012981	F036100	AGGA	MMDFTHAVVDDGEIIRKHRWSKREAKWYKDTHPDIQVVELPKEAIKPFNTNDYEEAPY*