Scaffold Ga0114962_10000017

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000017
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136876
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (73.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F032649	Metagenome / Metatranscriptome	179	Y
F033308	Metagenome	177	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_10000017100	F026556	GGAGG	MTSALIKLIFGLTLIVIAIALGPILGIWALNTLFPVLHIPLTWETWAAFAILLGGASGLSFGSRRS*
Ga0114962_10000017102	F009462	AGGAG	MELHESVKDTYKEMVIKENEGFRLTLKKHEVLSPKGLFSINMLQESLKDGDVIDSQTYNFFMTKQEMQVLANGLVA*
Ga0114962_10000017103	F043407	GGA	MTTISKNAVSNGLIGSTVSIGYGNAVPPATPLTVGTVYTTNNTGSAGQFLTSTGNGTSWRNFPGDNVLVAKNNPPELEVKGRMVINGRDLEERLDTIEKVLQIPERDVKLEKKHPKLKKLYDEYINALGKYRTFEAIKGDEDGTT*
Ga0114962_10000017107	F026795	GGAG	MVHLLSIKNTRKAIMAKNYKDYAYFENRPDVVKIFDDLEAYHNFCRLEMFPFDESHLYNRESWAWRNFEKSRRPKRLDSSRERKPYQGKNPKYATVE*
Ga0114962_1000001770	F032649	GGAG	MDERIEKAFNVANYMATLSNQRKVALEEFNQKLLFYINGATFLITLELINFTKMSLDLGRNSDVPFLDINNLPVNIVDVTEFFTTITDQYFEALNEYSVKFNEIKSKRKISDIVEL*
Ga0114962_1000001780	F015338	AGAAG	MSLKNGKPNPLNYFNLRRVDFACPHFKYTNLDRYNPGLIKKIDHWIISNLNNRYYIGQGIALDNTNTIVYNTHIGFESEKELSFFTIACPYLQQR*
Ga0114962_1000001792	F033308	AGGA	MTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPRGTVPFDIHASNGIATFEIWAESIQDAEHQVSQFLERGEDEQN*
Ga0114962_1000001793	F002977	AGGA	MKVQAPAEGILKHNDWGDSKVYRVTCECGSSECDHNVWVEADDTGVEVTIYTTVRTNFWTQTRWYHIWTLLTKGYIDTQSTVCLKSQGALNYAETLKSAIIDVEEFRKQQDDKR*