Scaffold Ga0114962_10000012

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000012
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147553
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (56.12%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010226	Metagenome / Metatranscriptome	306	Y
F010999	Metagenome / Metatranscriptome	296	Y
F021943	Metagenome	216	Y
F042217	Metagenome	158	Y
F062554	Metagenome / Metatranscriptome	130	N
F067723	Metagenome / Metatranscriptome	125	N
F104704	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_10000012115	F062554	N/A	MIRNISGSKYIQVSGGMHTNPYISPGASGAGMVRWSASMNCLEINDGNSWQQLHSSHPMIALSSDAETLLDWARAKRDEEWRIAALAAEHPTVADALAAMQLAREKLQVVIALCDTTTK*
Ga0114962_10000012130	F067723	N/A	MTQEQKLERWAEREVRRNIHTMIVDDESGGYVAFGRYHLRPSHQSFEVYTTGDNFIGTFSNKRTAISWCVADNHNQLRLAQSIKTLDTKKQTLSADIYCRRQVADRSRNNGFSEVVLTKLQPKVQQHALVDQELEKCLNSAKYIQLRGFQNETARTSGNQAN*
Ga0114962_100000123	F104704	N/A	MPKQPVTANSEKKQPQPKRPNEQGSFSVEAHVRIFDPKTREVYLEGRA*
Ga0114962_1000001249	F042217	N/A	MKVVKLNRRFRQYKKHGHVIAVRCDSWLGEGVPLEKICDTKLGARGFMPHNDWHAYFGKANGHGRRPFWITFRRESDLTLVLLSAQLTNNA*
Ga0114962_1000001266	F010999	N/A	MASLQGVKIMTPYSEIAAELAQRKANEYVPPSIPSVRQQPVEIPGVMYQTRELFQPVVSQPNKDNK*
Ga0114962_1000001267	F010226	AGGA	MAIQVIKDTAGNVLWTTDKAQINSESTNVTYQVFATALGTANAVGNLYANAVSVPNGTTQEIYVGAGNYLTLTGNNFTALALGTASSAQEGVIGYGSNP*
Ga0114962_1000001280	F021943	N/A	MLTALDQELFPKLCEVVAMPLHNQWIYLIQKNGSSSLRLQQEQNNLDVFCNEQILSLDFVDVYIRNPKARYVSGVNTYLQHLFRDHPELDVKTALWFAKRYKFLNTHYLPQFHWVANLSQYLKPTTKIRFRDLKELDKITDFRDRALIDPPSQDFVKKLLENDPSAELWWYLDQILLDLDGKLLTWQELINHYKSNYPDIIAHVLPKT*