Scaffold Ga0114962_10000006

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000006
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170963
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (67.66%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F024790	Metagenome / Metatranscriptome	204	Y
F030432	Metagenome	185	Y
F033804	Metagenome	176	Y
F041597	Metagenome	159	Y
F061850	Metagenome	131	Y
F095481	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000000611	F061850	AGTAGG	MGLLKSVEDVPGVDFYEYRDQHYYNKYEYRARFNLVGVRYTWYIKHDIQELVDRLEAPAVGYSHNTISYERDEVRENLAILASFLKWRNDLKKKKNSTIRIEHNTVGVFSNDLQELKDIVNYMPGIEIDVTQSHISNFIGIKHFVRNPNHKFRVYLKSRRVEGTFAIDLNDMFKKNKSLYPSPALKHWAKGSVHTNQHSWRYRFSNASHFIDYDDESTLSYLALIYGDMLGKRYKLEKRPEAV*
Ga0114962_10000006112	F033804	AGG	MKAKVYFYSLGQSARAKGMTKDQGMALYSIESAQDYARIAFDAGYRGLSI*
Ga0114962_10000006126	F001483	GAGG	VDKLKDFLFSLLTYIGESPFRLFTVVFLCILGFGGWIVYTEKDAFLASYRAQQALPKMNGKYDEAYNFLLKNTEVEMVAFLEVNTLINTRKVVYLATRNGGRDKRNDGLEVGLFSKNYDNNNDVIGLMSGKIPCSPYSKPQSLIGFVYKEYGVNYMCRISVPAEPGVFIGQISVGWKEQPTDVEAAQTAMIIASSLLFNKK*
Ga0114962_10000006130	F095481	AGGA	MDYIAYFMLGFGFGIPFYYIFYSDNSLDQLERMKHDLAVRKEWIRMLADQKTNNSKWPQGWN*
Ga0114962_10000006133	F041597	AGGA	MADIIFSGVNFSGGFAITAPPPPSYKAIFGYGYSSPSYISITNLVSNTGVVATDTTGVGTARDELAAAGYGTDKALFGYGFNNSGLVSMTNLVSNTGVVATDTTGVGTARSQLGAAGYGTDKAIFGYGYTYSYSAVTNLVSNTGVVSTDVSGVGTARYALAAAGYGTDKAIFGFGEDGAVGPVSITNLVSNTGVVATDTAGVGTARTQLAAATYGTDKAIFGYGGNPNVSITNKVSNTGVVATNTSGVGTARYILAAAGYGLDTAIFGYGRILSPASVTAITNLVSNTGVVANDVTGVGTARYALAASNYSI*
Ga0114962_1000000620	F024790	AGG	MINWFRQKLHNFIFPQDNEVVESKPHRRGPLAITRGSQLDSRGMNFTIHMANGGYVLEYSSYNEKTDRHDNTLHIIPSEQDLGQGIAHVITLEMLRK*
Ga0114962_1000000670	F030432	N/A	MNNKPFPITSLQKGKFLVSWPKWGNIQTFAIKKKLLDVLFEDIGSDEVGISMSIVKDELDIMWITLNTWAQDINGEYARYLEDMYEIKGVAFNSEDEALKLQDYLEKKYIWKTLQA*