Scaffold Ga0114918_10216106

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10216106
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F067690	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_102161061	F064194	GGTGG	MKTYLVEINAVVWKQIEVRAESVEAAETQAHELFDLAADGCPERYDQQTSQIWLDGKEMM
Ga0114918_102161062	F049595	AGGAG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTKDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE*
Ga0114918_102161064	F067690	N/A	MEVRRMDNALHMGRMIQLELKLRDGGSYYLCDTKFSVMSGRIRRQINAIEHVVEHYASVNGIAVKHSYEEVVEMIRKAKGVK*