Scaffold Ga0114918_10157775

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10157775
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1348
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_101577751	F035200	GGAGG	MNLKYIVLRDGVRVSEDMHSRLEDAEHEAEFWRKVIRSWPDGTKVTIKKIGG*
Ga0114918_101577752	F010746	AGTAG	MTYLCAVSGQAIPPERVEALQVLGIPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDGGSLFENEITTEVEL*
Ga0114918_101577753	F016115	AGGAG	LKILEDSFSKKGFNFSLLKREDDVAIYKKTLEDSEIDAHTYEVIAIKRHNGYEIAGVKMPPAEMYPSDGQWGDWGHTCTSREDADKRFIQLKEKLTNYTSTSVLESGEKRKRGRPRKIDLTKTESVVV*
Ga0114918_101577754	F020860	N/A	MEITKAKKLKEGGYALYAIDPKTKTETQVGYIGESLTLEAWLPKGVKIENS*