Scaffold Ga0114918_10113892

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10113892
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1659
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_101138922	F018962	N/A	MIKIVLESARNGVIKKVIDDNYGGGKQQFTSTDVYELEEFPSNENSYIKRFFFDLCDDLGLDLGGKFDKRVLDINTVWGSHFEPSDKDINARIKKLKLEIEELEELKNERTAGI*
Ga0114918_101138923	F008190	AGAAG	MKEQLEFNFIYSDDAVSIKTFLGNVPKSIECINYMDIFNKLTKNDYYQYEPSDAVVSSYLMRQLQNAINRNISPTIFYVLGNLNKETVGGIQNYVESLSNKAITYKIYHSPDIIVNGTAELFDDIIEFE*
Ga0114918_101138924	F004606	N/A	MKTHRIFDKGQTVYCLLASHSKPNILLSVKGIILDTKWDPVNPLYRIRIIKFYDTMKFIKQHFFSMNFRHVFENRARKMILKAEDFKTTKLLEERLNDKDRERFYVVIESVMCTKTKVGLSELFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSTKEFDVRYKKSWQDKFEKCNLNIDKYLTSLG*