Scaffold Ga0114918_10095801

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10095801
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1854
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F020816	Metagenome / Metatranscriptome	222	N
F031261	Metagenome	183	Y
F078570	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100958011	F020816	N/A	ITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDEV*
Ga0114918_100958012	F031261	N/A	MTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYQGGR*
Ga0114918_100958013	F010318	AGGAGG	MMNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEQHEGNQGETDWKWSAQENILTEDWTLVEGLN*
Ga0114918_100958014	F078570	GGAGG	MEEYIILEGKVMWAFLNKKDKWGAYGICLIPNKKSLEIVKENKFYNYKEDKGWISLRYTELDVNIYDKENNLIMNLDYYLGNNSHIKVRCKSFISKMVNQKCLYLESLKILKHVKIKSDINWEVK*
Ga0114918_100958015	F010532	GGAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDKPMEVSEVDITHRIEEHMSYMVSSYLTKSYEGIGMDEQALRQA*