Scaffold Ga0114918_10036280

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10036280
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3453
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100362801	F008307	AGCAG	MVKVIKQSSLELSAEFEEIFDGATVEEATQKAFNQKMPSEFAKVNITDNKFIKANVKVVGEEHDNESKQYSKIVPEAE*
Ga0114918_100362803	F005537	AGG	MSDNIKFINNLEKLLHEKEGDYGHFDHTAFVMGGIMEKYLSVHNNKPVKVPLKFFGLFMIFLKCWRIMQSKDYKKDSFDDINGYTELLRRLVVNENKTKRS*
Ga0114918_100362805	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDSGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYPEAGGQKGLIGWINESGNILSGYKNEPRPKQPKPQSKEIPF*
Ga0114918_100362808	F003365	AGG	MKTIGKEWTRKEEGGTFTADHLSPSQLNKSLDIWFNDYVILTAKERKDLFGNLNMDIGAIVGQAVQDLIVHKLTLEEVMKGKK*