Scaffold Ga0114918_10029702

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10029702
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3927
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F022658	Metagenome / Metatranscriptome	213	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100297021	F022658	N/A	QEILYNLEFGWWPMYVDAVMGGTLYANLPNGQLISAFNPNLLIKNDQTLIRLDTFKAVETFYSSLVSDTSNVNSVDTANYNHALERYEKEYEKALQLMNFYDLYQDSPEGPTTKLEENWTADSSFFNDNRRFF*
Ga0114918_100297022	F051963	AGGAG	VALSNLPLVDKTKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGIYVDDVTENSRTVNQLGVQSCASMYDAVDEFNILYISYQNDPQSPVILNAINNLAANVNFFDGYTSVEYNRDVTIGNRSEIHTYTFNLTRLEFNNAIIS*
Ga0114918_100297024	F003807	AGGAG	MTDSNDVWLKTDEEKLRSLIGDEAKMMPMLENMGATIRQLKAKQQFRLALLNQLLESLDSKD*
Ga0114918_100297026	F078735	N/A	MNSILQIDGIGKRYGLLPSQVIREADTFDLYIMDAAMTFEHYHNKKANTGKAPIPAYTQDELVGMLGKKKNVI*