Scaffold Ga0114918_10027968

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10027968
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4082
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039602	Metagenome	163	Y
F039673	Metagenome / Metatranscriptome	163	Y
F097205	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100279682	F039602	AGGAG	MKKKKSRVESVGVLLFQGVIDTYYLTVPYDKKNRVIPSSVECAYNSRYFSPQQTINMLRAL*
Ga0114918_100279688	F097205	GAG	MAVSVPFQQAFTWRKLGYLYFTNSLDYREVLTQNPQWKVTELPPLGAQIRLNASANTAGTPGGLSQGSFVFGLPTGQQRANIFPYETEESYNSALNRYTLQGVIDREEINGITFDSTQAITGQQGG*
Ga0114918_100279689	F039673	N/A	MATFSLGTSGVTPGAPGVYLNEQAGRAANANLADFSTVYMLVETDEDVPVTRFPFNSPTAITSLNDYKELIRVGTSTVPEGRIPLLSYNCVNEFFQNAQVGDLRVVRVGTPNQIVELEFFPSATKLNSTSLPSALIAGNVVYIQMTINGLKLVAGDGSTGYTSNGEWLGVPVTIPVNYVAGDEANNRKISAAMATAVAEAIESNPAVRSSVYVRDTGMFNDLD