Scaffold Ga0114918_10024463

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10024463
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4436
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100244632	F000720	GAGG	MVLNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKELADTLSQDNIIGQMVNYFTKNVEDIIMGVPIDKKQRMLSTDPYASQMKE*
Ga0114918_100244633	F046006	GGAGG	VKEYSPPLAKYINTSLLMIVWFFCLSLLVVNFRYIAKLDNTINTMWHEIEQVKDTNIKLYQFIEEHGNGFK*
Ga0114918_100244636	F004988	AGAAG	VPKLIETICPRCDGNGFIKIPPVIATVGDKATEMDCPMCEEIITHMGQRITTHNGYVMLPTEHTRKNVEGGRESKIKWSGETLPEVGKE*