Scaffold Ga0114918

Basic Information
Taxon OID	3300009149 Open in IMG/M
Scaffold ID	Ga0114918_10022133 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009149 Open in IMG/M

Scaffold ID

Ga0114918_10022133 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4725
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4725

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.622	Long. (^o)	18.254	Alt. (m)	Depth (m)	437
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Baltic Sea

Coordinates

Lat. (^o)

58.622

Long. (^o)

18.254

Alt. (m)

Depth (m)

437

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100221332	F017335	N/A	MNIRSLELKNKLSIEKTGEQYYDLSAPSFSYKRELGVKAIHYVTVDQAGRIDKISELYFGTGAYVDAICVVNNIFNPFSLSEGDILAIPQLQNEGLVYSRPNPASRPSETLAQYVNTDRQSDLDQSRIQRLIQKAKTKKAGVKAPIPPNMMQQGQVAKVYEGGKILLGANLPSRNNTNTQS*
Ga0114918_100221334	F004606	N/A	MKAHRIFNKGQFVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYRIRIIKFYDNMKFLSQHFFAMNFRHVFENRARKMILKSEDFKTAKALEDRLNDKDRERFYVVIESVMCTKTKVSLSGLFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSTKEFDVRYKKSWSDKFKRGGLNIDKYLNSLG*
Ga0114918_100221335	F008190	AGTAG	MEEHIEFNFICSNDAVRVKTFLGSVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAISRNISTTIFYVLGNLDKETISSIQEYVETLSDKPITYKMYHSPDIMVNGTAELFADIIEFE*
Ga0114918_100221337	F018962	N/A	MIKIVLESARNGIIKKVIDDNYGGGKEHFTSTDVYESSDENEAIKNNYIKRFFFDLCDDLGLDVGSKFDKDVLDINVKWGSHYEPNAKDIDYKIKKLKAELKELEEWKNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114918_10022133

Overview

Ecosystem & Geography

Associated Families

Sequences