NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114918_10019039

Scaffold Ga0114918_10019039


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10019039 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5202
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F053077Metagenome / Metatranscriptome141Y
F053753Metagenome / Metatranscriptome140Y
F076869Metagenome / Metatranscriptome117N
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114918_1001903910F053077N/AMLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMINPFSESAVNINTKEKYYDFDYVSLDDDEIQNYKSDDQPFDDIIDLSGPLDN*
Ga0114918_1001903912F000716N/AMEKFKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELETMCSKKKQRIINVYKRAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFRDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKSK*
Ga0114918_100190393F076869N/AMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRDSYNAEKLITA*
Ga0114918_100190396F053753N/AMNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICIWQTRNGYRIEGAFNTKQNNVYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLNQGNLQLSVVDLDII*
Ga0114918_100190399F098653N/AMCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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