Scaffold Ga0114918

Basic Information
Taxon OID	3300009149 Open in IMG/M
Scaffold ID	Ga0114918_10012464 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009149 Open in IMG/M

Scaffold ID

Ga0114918_10012464 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6700
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6700

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.622	Long. (^o)	18.254	Alt. (m)	Depth (m)	437
Location on Map

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Source Dataset Sampling Location

Location Name

Baltic Sea

Coordinates

Lat. (^o)

58.622

Long. (^o)

18.254

Alt. (m)

Depth (m)

437

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F019967	Metagenome	226	N
F040332	Metagenome	162	N
F043149	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1001246410	F002495	GGAGG	MSTNGNAKQKDWVLFPYKADDERALKIAFSGNVTLDNGNKGTILRVKGVSKDGNTKFVRVFAQVGVVFKGDDKFTGEMNYPDAGGHKGLIGWLNDEGTILSGYKNDPKPKQAKPQSKEIPF*
Ga0114918_1001246413	F003365	N/A	MLKEIGKEWETFTADHLSPSQLNKNIDQWFYDYKVLTAAQRKALKPNMKMIFGGLAGQYLQLMITHNLTLDEVMKGKK*
Ga0114918_1001246414	F019967	AGGAG	MLKVKLEPIDVELALDVANKRFIGNLKMGKGFSYGYQGDYRKQIADSFLGALGEVCYAKAFNKYFNNSYTDNLERYNDSDFQGNIEIRTQEKKDYNFLLIRPGEKKGKYILIIHEGDFEFSILGWFPFINDMPERLTNFGYTNRPAVYKVDIKELMDMNDL*
Ga0114918_1001246418	F040332	AGCAG	MYRTPTSMDINEDSMIYAAKILKGKVNRNSNQRVQITLSTDVAMEYLKNNPHLINEFDKPFMERPNLPNKLDFINYLKSQITIKELVQKTNLPKTKIEHWFRKDNCFSYPSIEDWNIIKPFLKELKFDKELTYQIEKDWKE*
Ga0114918_100124645	F043149	GGAG	MALSNSNVRLYAKLDKAHKKIMNAKDGKGRQCVHTLNNFKEYNQLFRRIVQAENKDSQFLYT*
Ga0114918_100124648	F005537	AGG	MSDNVKFISELERLLNQKQNDYGDFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGIFMIFLKLWRVMQSENYKKDSFDDINGYAELLRRLVIDENSSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114918_10012464

Overview

Ecosystem & Geography

Associated Families

Sequences