Scaffold Ga0114918_10011679

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10011679
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6978
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022608	Metagenome / Metatranscriptome	213	Y
F026826	Metagenome / Metatranscriptome	196	N
F044367	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1001167914	F026826	N/A	MQFSPYLGKQLTRAIKANTTQFERQVVSEKNLISVHTLNTVISGERKITNFNEPALTEIIKLAIRNANNNGKTLADYYEQKEAAEATPLNNH*
Ga0114918_1001167917	F044367	N/A	MKNEILKVGAMLMPMGFMVAICDYKVYGSINFLIGFISLLELIDLKLKEKNKLKS*
Ga0114918_100116797	F022608	N/A	MDRVYIELLQKDSLLEQAHLSHSKEVLLYQVIDSTKKDIKSLEQLVYTIDSENLGLHLDNEKQKMQIRTNRTISFITIVTLFLFIAL*