Scaffold Ga0114918_10002509

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10002509
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16456
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004370	Metagenome / Metatranscriptome	441	Y
F057746	Metagenome / Metatranscriptome	136	N
F067752	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1000250911	F057746	N/A	MAIIGSFQEDLDIYLAENKGKSGASKQSDKELKTIGSIAKGTLDNGKMYSFEYFTPDEAFYDTYPVVLGLGQSDSGHQLGLNLHYIPYDARIPFLADLSKSFKSVISTSIDKAQGNPKAQQRLSQFTYENLKQSLGKKYNITYAIRQYRMDRIRKPRMLGYEDWYIGAVNNQNHFFGGNINDAQALYYKNI*
Ga0114918_1000250917	F067752	N/A	INEILEMRMEDIAKEIKNNFVDVFIPSNVLGKYNINMFMDYLDGIARKLEPRIYDEENPFDREDGELSDFNGELNLMNIAAEYINSLEYEDDLKERLKASVQDLYKRTLSPNHED*
Ga0114918_100025096	F004370	AGAAGG	MYKIRKINFGWYKRRHGILLENLPPLKQKLLLENNHMKWLDSDVDAFEIIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDLIEWNCGICKVEIKSRMDSKKVENFVCRKCVEAHNSRNNRVDQRIIDSSINFTRHCKSLLKGEQREFMNHIRRSSKA*