Scaffold Ga0114918_10001014

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10001014
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24722
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (9.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035780	Metagenome / Metatranscriptome	171	Y
F046977	Metagenome / Metatranscriptome	150	Y
F059863	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1000101411	F035780	N/A	MENTIDVKAKDEVWWATTNEYDLEVNGENLSVRIAETPKSTEFFVWNESTGWEEADTDEGIMEIVYEAWSNGELE*
Ga0114918_1000101412	F059863	N/A	MTKSKVEFNVGDKVSWIRPMTCVPHPEGKTDRDGNVLPVFRDKLEKGRVIGTNANGYSIRPDWAEQYKDAICGERYYDKTVGIKDETLKKL*
Ga0114918_1000101425	F046977	N/A	MVEKTNKYKVELKGDLLMVKDLQDNLLQGLAVPAWDAVNRFKAMVLKVKEYESKNQSK*