Scaffold Ga0114918_10000308

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10000308
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41532
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (10.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045767	Metagenome / Metatranscriptome	152	N
F068848	Metagenome / Metatranscriptome	124	N
F081877	Metagenome / Metatranscriptome	114	N
F101085	Metagenome / Metatranscriptome	102	N
F103276	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100003082	F068848	N/A	MGMSNNKDAETKYGMLFKFMNQSRSNYMGLDLTYDYELLPENRISVDIFAEGNFDLPLRTKQMFRNMFMAFFAKDSKYFNIPKSTVGLLDFNNILLNGERLGDRITIDDNLKKDLVDVESKLKKYYSIDLPDYPQGLYRLESFDNVLETYIEIVDADSLMYTTNINDTKKITLNGNEFNRNTIVDFLDSVDLGSSTGNMLVDPNTIFESISNSIWETSVEGDGASLELFWDKLISNGMNYQNHFMENIGMLSLVNLRSYGGMFNDNMHNYNTESQSEILSIFIGWLETNKGKYKL*
Ga0114918_1000030852	F081877	N/A	MNTKKDMEFKSEEEFNRVAKKAVQILLYVVESKSPILRKLRATNFISKIYGANQNGVVYFEIEVPFTVDDPDHGPFCNELDKILSGIQNTFGNYHLNSNVEFILKTEEGDDMIGFLNSCSFDWTDHEDEYNGKANYGFEYNWSSID*
Ga0114918_1000030867	F101085	N/A	MSKSIVPQSNNDKSGNSYMMNLINKLLGKIFLKKPVFFGLNDQKITLLVSPTMKIYGVYVSPERLRSRFPFQERKFLNLKDLKLWAEDNEFDISFSAETPKLKRELLISLGDVMVESTGDKERELSVVVMEELKKSKLPDSIKEWAKENPEKFIRNIRHVQNILKR*
Ga0114918_1000030873	F045767	N/A	MFGKNKINKMGIKDSIRKNIQILQEEKKVTLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEIRVLKSRGINQKLINENLVQVLSQMFDEEGPRFLDVVKEKLAQYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGDKYSMVNMDNSQEMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS*
Ga0114918_100003089	F103276	N/A	MGTSMEKFLDKTKDDNKIVDMYIDIRKWLQSEGHTTITSQSISKAPMDIWKLMEDLRGEVETLRTTLKRYGILEDDKTYNKWLQTKLLRIDKEFPLLDEKND*