Scaffold Ga0114918_10000294

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10000294
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42036
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (9.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y
F080185	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1000029410	F020206	N/A	MALDIKKANKTYEFSNSSVSKIVASKAVGKDILIRNYADNDAAKASGLSNGDLYHTDGVLKIVYEA*
Ga0114918_1000029422	F006666	N/A	VNPKKHKDFKIGIAEEVGVHPQVVDDFITFYYGKLRKKLSALEYPRVNVDGLGTFYLRKTKLENLIKKNKSTLGNLAKRTYNGYAQSETIQNNIEQMSKALVQMEADILRKKEFKAK*
Ga0114918_1000029459	F002047	N/A	MWQLFQIMLKNNLTPNQVLLLFGIKQGVSLPQVTNDDKLALERLGYLTLDNGKYTMSAEAKSLIVHLDNYFTKAKKKTDAQLMGQDFVDKINIYREIFPNIKLPSGKPARVNVKMLSESFRWLFETYDYTWDQIIKATKMYVNEYRDAQYMYMQTSQYFICKQDKHKVKSSTLADYCDMIRDGIETESKHFKENVI*
Ga0114918_1000029460	F080185	N/A	MKTEIAITIIYAAIVVALLVGEVKCIIKAVQCNWEPIGKAEIFYTAASVTGLGAIVGYINIQDK*