Scaffold Ga0105243_10000128

Overview

Basic Information

• Taxon OID: 3300009148
• Scaffold ID: Ga0105243_10000128
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85995
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (47.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002175	Metagenome / Metatranscriptome	587	Y
F087265	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105243_1000012813	F087265	N/A	VARVNSAVRRLLLNIDESTMKRLLLLSVAVLGLPVLTLVRQPQMLSGHAGALVQSKKKSIIRRVSYFKYPVEMSFELNGQPLESTETVDGSERTNYFEADADWLNHLTIKIKNTSGKTITWMLVNLLFPEVTKDGAIALHQIFLGVDPDAPFARPEIRVAPNETFEIPLSTKYKDLGRLVNVIGSGMAIENVSKVEVEFHAALLDDGTRFQTGLWYRRDPKDPHKWIPIDN*
Ga0105243_1000012867	F002175	AGGAG	MAILTSSPGAENEVKVYDVPDDVLAQYAMTGDKAAAMFPEKGATEGIPKASAEMSPTKVDNTESLGEVQAYSRICICRELLCNPWRCWWHYYYCYC*