Scaffold Ga0114129_11181274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114129_11181274

Scaffold Ga0114129_11181274

Overview

Basic Information
Taxon OID	3300009147 Open in IMG/M
Scaffold ID	Ga0114129_11181274 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	954
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011678	Metagenome / Metatranscriptome	288	Y
F081531	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_111812741	F011678	AGGAG	MPWHKVVIRHDDQARWSAAALMRPFIMGYHEHGSTPPANAFVYHGLTDTGDHVYYFSPEASAISLATKAFQTFDVTQCT
Ga0114129_111812742	F081531	GAGG	MERTPLYLEDYLQKLNEELSNHPECLPGMQITILRPELKYSYEICDPTRDPTKPGSLQERMRADRVFKEVIAKVNEKYELIRP*

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