Scaffold Ga0114129_10384580

Overview

Basic Information

• Taxon OID: 3300009147
• Scaffold ID: Ga0114129_10384580
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1853
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000307	Metagenome / Metatranscriptome	1330	Y
F001529	Metagenome / Metatranscriptome	677	Y
F001704	Metagenome / Metatranscriptome	649	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_103845801	F001704	GGAG	MRDLAAAANRIDYWIRRHVIVSRYGTHPPSQSKLNSARDRCGGLSAIGQCLKDQYDALATPIPPH
Ga0114129_103845803	F001529	GGAG	MGISKMDRRDQELLDKQMRRLVPPQNDGVIAVMLAAMLLVGMALGSVLSAHQSEPIQIASME*
Ga0114129_103845804	F000307	N/A	VGRIMKAMATPEGTPWMWTLAFGYHKERTPSHGYAAMREEAMAAFGKSWRRE*