Scaffold Ga0114129_10166446

Overview

Basic Information

• Taxon OID: 3300009147
• Scaffold ID: Ga0114129_10166446
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3008
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012952	Metagenome / Metatranscriptome	275	Y
F013479	Metagenome / Metatranscriptome	271	Y
F030261	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_101664462	F012952	GGAGG	MTIHLGAVLALYGLLVCATSAAAEGAWTLWMMGASSPWDSVDTFPTREQCVEALRQEAQAVGKLGLHATEDVPGASFAGTDADRDIRGQCLPDTEDPRGPKK*
Ga0114129_101664463	F030261	GGGGG	MAGCASMQPVTGAPIADVGVIAGKWAGSMTPGDVPFYLTITAGGTLTAAWGANTAWGTVTTRDGKATFEMQPGFYEGTISLYDGGGTRRLVLDDSWASFNAQVVPQ*
Ga0114129_101664468	F013479	N/A	VGGAKRRLTDSRSRRLLEDDMAKTRAFSIVVTLGLALLTTAGPAGAYVIEALTSIPANQAGDKAALEKVIEAAVDDLANHAVRFTPTLVSLRDAKLVGDRIYLFVLLADADGEAEIEALKAVDTVPGPDSR*