Scaffold Ga0114129_10000344

Overview

Basic Information

• Taxon OID: 3300009147
• Scaffold ID: Ga0114129_10000344
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54235
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (53.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001870	Metagenome / Metatranscriptome	624	Y
F021726	Metagenome	217	Y
F026820	Metagenome / Metatranscriptome	196	Y
F096800	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114129_1000034415	F096800	GGAG	VPSRDRCATCDAALDLERYARCDVCKGARYCMDCARRHLCIARCASNGCIAGLCVHAVRAGVVDPRYGITG*
Ga0114129_1000034434	F026820	N/A	MQVSQVAYDRFVVDLPPADAEYRPLADPETVAETAAWLWDFGPTPLVAVVGYKGAAPSWLSAWSPRVVAWAPQGAKTGAALVLSSRPDLERFLSEGAPHEHTVLLWPSRSEAKTFEALAAGGAAWLKTIDAHAEISNQGERFEVNQVAPA*
Ga0114129_1000034458	F021726	N/A	VRATLQTVILQAADLPAEYAIEKDEDMTADDLANGLGTTQAELKQRFALGYVRSFRKGGEPFVCCVIDSILIRTADAAAAIATANEFRARALELGSVQSDLGESIGDESRAFTFQQPTADGYLVTLTILFRYANVVDAVEVTGRPGSFERPYVLELAKKQLERLRADAEKR*
Ga0114129_1000034460	F001870	GGAGG	MTITVSLLLALIALVCGILMLVSGRWSRFPLAAIAIICLALNQSGLIKM*