Scaffold Ga0099792_10279392

Overview

Basic Information

• Taxon OID: 3300009143
• Scaffold ID: Ga0099792_10279392
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005262	Metagenome / Metatranscriptome	406	Y
F005616	Metagenome / Metatranscriptome	395	N
F071477	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099792_102793921	F071477	GAGG	MPAAFQWARLKADVKCALRKGAWYRILKLTSTEVVLDVRGKPLSVPRGQLQLS
Ga0099792_102793922	F005616	AGG	MIPYGGEGLRGEPQDFRIPRTGDRDLAFRGWLLSHAEERSGSPGLTRGVDIDIYLTIRLRLVAHLCRWSLRDGEGLREEHRVAAHDSPARLIEWLKHENAGSLDAPSKRAWVRACQAWPGLKSEAVERVD*
Ga0099792_102793923	F005262	N/A	AGQAAPGHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKQMISHVQLAQYTGAGENSNLVILEFPNWAALDTYEAKLEEASQVVLHKPWSEATAGFAELRRLVRVEIYTPAGRR*