NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114949_10565750

Scaffold Ga0114949_10565750


Overview

Basic Information
Taxon OID3300009139 Open in IMG/M
Scaffold IDGa0114949_10565750 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKermadec Trench
CoordinatesLat. (o)-34.3456Long. (o)-178.1771Alt. (m)Depth (m)8081
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071263Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114949_105657501F071263AGGAMDRIRDLCDLARDVNESLESLIRFGASGELTIYVMADDWPVRYSDETENTVKGPVFLLAEDLHRSMNAQCTRVSQVRRPRDDEVITLDEPVDVDRGVHFVSAEEAERFSRKHALTLKSSTETPSYLNPNHKSYSTELAIAVKAWMALFADGSFERGSKTARQRIVLWLKARRFGLKGNAEQRIASLVNPDPAKVGGAPRTPTK*

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