Scaffold Ga0118735

Basic Information
Taxon OID	3300009136 Open in IMG/M
Scaffold ID	Ga0118735_10001116 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9403
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.54%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9403

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.54%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)	Depth (m)	541
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

39.54345

Long. (^o)

-72.3998

Alt. (m)

Depth (m)

541

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F005132	Metagenome / Metatranscriptome	411	Y
F013231	Metagenome / Metatranscriptome	273	Y
F024348	Metagenome / Metatranscriptome	206	Y
F052949	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118735_1000111613	F013231	N/A	MEKTYQTCKLIKNRVDLYLYEMAILFANLGTDSTAEEVKEAYAKEAVFIDKIEELDPVKARSLRTSY*
Ga0118735_1000111614	F024348	N/A	MNFDRHYEDITESEANFILDIYESIDALVYYSQPVTLVRLAHELDVTSAELSDYLPTIITILNKVEEQYEVRQKPD*
Ga0118735_1000111622	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYDDIEAKVLAETLTTEEQGLFKLVKYTLAMYSAKAAISILRTATAITKAEEQKQDQYILDTISTTIDSKLSYINKRITNYILDNAAIKAIATATGCNDDLFNEQDNYQGDVFYPQDGITDTFCEDGGVSYTP*
Ga0118735_1000111625	F052949	N/A	MKGNIFISVPASDIANALPTSITRYDWVEHTYNEEGEVESTTAVHPTWEQFGIRNKGLFGSPVTVADVVVYEMEASWLDSEVSALIALGDGQPAPNYTVYTNAEVRQFIAENTAEL*
Ga0118735_100011165	F005010	N/A	MTRKIKHVREVQKYLDMLMIDNVNLSIQASRFGWSDDIQNQLTNSALLIRKYQRRMRLIKM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118735_10001116

Overview

Ecosystem & Geography

Associated Families

Sequences