Basic Information | |
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Taxon OID | 3300009136 Open in IMG/M |
Scaffold ID | Ga0118735_10000284 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15621 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Hudson Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 39.54345 | Long. (o) | -72.3998 | Alt. (m) | Depth (m) | 541 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004461 | Metagenome / Metatranscriptome | 437 | Y |
F006322 | Metagenome / Metatranscriptome | 376 | Y |
F027314 | Metagenome / Metatranscriptome | 195 | Y |
F084717 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0118735_1000028412 | F004461 | N/A | MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDVCVFDGASAATIGEKEMTVLTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDSDFKDWVFDYFAKLSAEKALNVAGTLLTTEMAADAAVLDYDTDAVLTAANILDKLEGAYASMSDVMLSAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPVNEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA* |
Ga0118735_1000028413 | F027314 | N/A | MACNITLADIAYSCDDVAIGGIVELHVANRSDALTALTEVEATRTISAATAVTGVTQISFNNKDAFSVFSEVKTVSADGIVSTVPTVSVELPKMTAAKITALNDISKGGAELVAFIKTAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDEQGLSYSIDAADFVTATA* |
Ga0118735_100002842 | F006322 | N/A | MPTKRDRSGAIIAGKGVNLTDLQEQFLEGIRNEGMESASRISKELNYTSFYRDRRNYGTAFYKELMKITNSELSSIEAAKGTNLSALIKIRDNAIAGGDMKAAMESIKIINDMQGYKAPTKVEQTKFDIKATIDLTAPVDENDGFLDIDFSEED* |
Ga0118735_100002845 | F084717 | N/A | MFEEFGTNHNMVSEFKLLNSLDDLEKIEMNYRGMYISLNDANISRENSNPVYDISIDIVIVDRILLNDPVALINSNQENLFVMGQLQDYFIQNLSGEQNFQEVNIQGFSDDDYNITASISNATFVLGRTPYIKAVDV* |
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