Scaffold Ga0118735_10000284

Overview

Basic Information

• Taxon OID: 3300009136
• Scaffold ID: Ga0118735_10000284
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15621
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F006322	Metagenome / Metatranscriptome	376	Y
F027314	Metagenome / Metatranscriptome	195	Y
F084717	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118735_1000028412	F004461	N/A	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDVCVFDGASAATIGEKEMTVLTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDSDFKDWVFDYFAKLSAEKALNVAGTLLTTEMAADAAVLDYDTDAVLTAANILDKLEGAYASMSDVMLSAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPVNEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*
Ga0118735_1000028413	F027314	N/A	MACNITLADIAYSCDDVAIGGIVELHVANRSDALTALTEVEATRTISAATAVTGVTQISFNNKDAFSVFSEVKTVSADGIVSTVPTVSVELPKMTAAKITALNDISKGGAELVAFIKTAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDEQGLSYSIDAADFVTATA*
Ga0118735_100002842	F006322	N/A	MPTKRDRSGAIIAGKGVNLTDLQEQFLEGIRNEGMESASRISKELNYTSFYRDRRNYGTAFYKELMKITNSELSSIEAAKGTNLSALIKIRDNAIAGGDMKAAMESIKIINDMQGYKAPTKVEQTKFDIKATIDLTAPVDENDGFLDIDFSEED*
Ga0118735_100002845	F084717	N/A	MFEEFGTNHNMVSEFKLLNSLDDLEKIEMNYRGMYISLNDANISRENSNPVYDISIDIVIVDRILLNDPVALINSNQENLFVMGQLQDYFIQNLSGEQNFQEVNIQGFSDDDYNITASISNATFVLGRTPYIKAVDV*