Scaffold Ga0118736_10031031

Overview

Basic Information

• Taxon OID: 3300009135
• Scaffold ID: Ga0118736_10031031
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F085210	Metagenome	111	Y
F101024	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118736_100310311	F085210	AGGA	MFVIPNANTLLTYIKDFTGSSDDNEIKQCIFMAELSMRNIELPVLRSDPYDAEYIATADAQGRVPIPGDMNKPILFFQQGGTTPSPTGPWIVYDRIGDRRIIAETMIAQFYKNT
Ga0118736_100310312	F001299	N/A	MENYSNNPEHLSDEDPEKDLDYMRQDKGGVVTSHNGVGDKLLSGNNELYNSMKGDWSRKALNKSGNIEVTTGREGNKFYIRREQKNIEAIKQGVREYRQLAEAGFPDPLAPVMPDGKLGYKWMELPKAISFEIAETYFGGMPWEAIKRDKTLKAQFYQVVQTEYPAFICYPGGKLPIPVDVPYPTRVGQERFFRGH*
Ga0118736_100310313	F101024	N/A	VIQWGSLRDLGPNNEVFSNSDASLDQFIMEGTLIVRNPAGVGVLNDIESGTSAPLPGPRVAALVQRTNAGPGDVTP*