Scaffold Ga0118730_1296770

Overview

Basic Information

• Taxon OID: 3300009132
• Scaffold ID: Ga0118730_1296770
• Source Dataset Name: Combined Assembly of Gp0139359, Gp0139510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 839
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y
F067823	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118730_12967701	F036736	N/A	IGALAVVGSFVTKRVFNNHDSLSNRISALEKTVVTKEDLIHIERNVEMILTHLINKGDTP
Ga0118730_12967703	F022754	N/A	MLVIPPPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGSPTFIRHPDHWYPVEPPKPLKMNIGE*
Ga0118730_12967704	F067823	AGGAG	MDIASMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPVLSTVWPIFNWLAGN