Basic Information | |
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Taxon OID | 3300009132 Open in IMG/M |
Scaffold ID | Ga0118730_1098791 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0139359, Gp0139510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1951 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F056672 | Metagenome / Metatranscriptome | 137 | N |
F066124 | Metagenome | 127 | N |
F069327 | Metagenome / Metatranscriptome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118730_10987912 | F056672 | AGGAG | MKAQEYNLTGNEKFSVWFTTMMMMTTAQLDSDSKARIMNMAKIMCVGECLDMQKLENGDPVEMEKSKEKQKEFEMMKDAIWKEMDKIQEVLTACYGEPRKGNKHHRCRHND* |
Ga0118730_10987914 | F066124 | GAGG | MGRWDQDKRPDVELLADFRNLQLQLLHCKDRRKNALGKYEIEKEDSKIKESYQELRELYERSDNRILELICQDKAEGFETIAWFLMLSEETQKRLR* |
Ga0118730_10987915 | F069327 | GAGG | MGRWDEREKAFDGDTPEEIMDDFEVAKWEVSSYRYKKEHFLIGLDLISEGKRIDEQLGFWESRLEILCRKNYQLLKSKGKDIDEVMDFFSEKTKENLK* |
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