Scaffold Ga0118730_1098791

Overview

Basic Information

• Taxon OID: 3300009132
• Scaffold ID: Ga0118730_1098791
• Source Dataset Name: Combined Assembly of Gp0139359, Gp0139510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1951
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056672	Metagenome / Metatranscriptome	137	N
F066124	Metagenome	127	N
F069327	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118730_10987912	F056672	AGGAG	MKAQEYNLTGNEKFSVWFTTMMMMTTAQLDSDSKARIMNMAKIMCVGECLDMQKLENGDPVEMEKSKEKQKEFEMMKDAIWKEMDKIQEVLTACYGEPRKGNKHHRCRHND*
Ga0118730_10987914	F066124	GAGG	MGRWDQDKRPDVELLADFRNLQLQLLHCKDRRKNALGKYEIEKEDSKIKESYQELRELYERSDNRILELICQDKAEGFETIAWFLMLSEETQKRLR*
Ga0118730_10987915	F069327	GAGG	MGRWDEREKAFDGDTPEEIMDDFEVAKWEVSSYRYKKEHFLIGLDLISEGKRIDEQLGFWESRLEILCRKNYQLLKSKGKDIDEVMDFFSEKTKENLK*