Scaffold Ga0118730_1004467

Overview

Basic Information

• Taxon OID: 3300009132
• Scaffold ID: Ga0118730_1004467
• Source Dataset Name: Combined Assembly of Gp0139359, Gp0139510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14235
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077259	Metagenome / Metatranscriptome	117	N
F089769	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118730_100446710	F089769	GGAG	MTEDKDVWMKYESRIDEIINNNKISLDDVAELFDIGHAYNIERKLIPERLSDWMKNQSDKFRSKSTSLYKTLGIDKPTSRPTDGYTMAMVVSDVWGEIFMERPVEEVFVNIGKKYDVDKSVIMQNFMKHWSAGLDYHLVLRMKELSPFEMGLVATLVSPIIEKTKSVSDKLN*
Ga0118730_100446711	F077259	GAG	MEMRSVNHQYIQQAHGILKANLMPLSNRRLRRLAYFDVYFQNYTQLDLYNRYKKIVNSDASNNQMITLAVVLIIFSALIIIVTKLYS*