Scaffold Ga0115027

Basic Information
Taxon OID	3300009131 Open in IMG/M
Scaffold ID	Ga0115027_10000004 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009131 Open in IMG/M

Scaffold ID

Ga0115027_10000004 Open in IMG/M

Source Dataset Name

Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30948
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (37.04%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

30948

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (37.04%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	(Source: IMG/M)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.224	Long. (^o)	-82.304	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Old Woman Creek National Estuarine Research Reserve, Ohio, USA

Coordinates

Lat. (^o)

41.224

Long. (^o)

-82.304

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013505	Metagenome / Metatranscriptome	270	Y
F021068	Metagenome / Metatranscriptome	220	Y
F022611	Metagenome / Metatranscriptome	213	Y
F034858	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115027_1000000417	F022611	N/A	MWGLPDRQPFNIGPYKLWPCFSRPEFQWFAAIDGQPHYFRTTNEAKLYVRDLLAMGDEEGLCD*
Ga0115027_100000042	F013505	GAG	MVLYCSFVRNQAMHCTIEGHRDNPYLAKLEADRQAQHSGYGVRSYLCTDGSTKWEAYGWERITEFQLHDTSYGLFDHKWEAEQYFNSCIYGQQ*
Ga0115027_1000000434	F034858	AGGAGG	MILPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGLKPEEILIVNGGQAVRAFTSYKGVPMLLTQQNSFEYTPLIEIVEHSMESPYWFLLHDTCIAGPTFRQLAYEPPVEAPEKVAMKHTPSMSIGLYRHDYLMAHKQRLMAIKNTDSSPDALQRWKQWGVPNEDYMLWKLQDVPCHIYHPDKHGPDEWNYQGHADPYGTGMQRRIEYFPQLELAKAKSNWQGVQPHLCIDI*
Ga0115027_1000000437	F021068	GAGG	MQPSDCTIYAVCIPGEAVRYEARSRIVPIMGGAHALSGDEREALRSQGYVFDDENASLSRLNSRWGELSCISWMILNANEKNIGNAQYRRNWLEPGDQWYDENTLYFPEPALFNCTLEQQFYGGHSTFDAPAITREIADSGSWIFSREEIDAIWNQNSFIGCNMARGSNVQYKQFMSALFVALAPIWHKHEEQFLHIGGYDKRALAFIAERLITGMVLYRDKLFPGMNIATAPIGFIH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115027_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences