NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115027_10000004

Scaffold Ga0115027_10000004


Overview

Basic Information
Taxon OID3300009131 Open in IMG/M
Scaffold IDGa0115027_10000004 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30948
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (37.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.224Long. (o)-82.304Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013505Metagenome / Metatranscriptome270Y
F021068Metagenome / Metatranscriptome220Y
F022611Metagenome / Metatranscriptome213Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0115027_1000000417F022611N/AMWGLPDRQPFNIGPYKLWPCFSRPEFQWFAAIDGQPHYFRTTNEAKLYVRDLLAMGDEEGLCD*
Ga0115027_100000042F013505GAGMVLYCSFVRNQAMHCTIEGHRDNPYLAKLEADRQAQHSGYGVRSYLCTDGSTKWEAYGWERITEFQLHDTSYGLFDHKWEAEQYFNSCIYGQQ*
Ga0115027_1000000434F034858AGGAGGMILPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGLKPEEILIVNGGQAVRAFTSYKGVPMLLTQQNSFEYTPLIEIVEHSMESPYWFLLHDTCIAGPTFRQLAYEPPVEAPEKVAMKHTPSMSIGLYRHDYLMAHKQRLMAIKNTDSSPDALQRWKQWGVPNEDYMLWKLQDVPCHIYHPDKHGPDEWNYQGHADPYGTGMQRRIEYFPQLELAKAKSNWQGVQPHLCIDI*
Ga0115027_1000000437F021068GAGGMQPSDCTIYAVCIPGEAVRYEARSRIVPIMGGAHALSGDEREALRSQGYVFDDENASLSRLNSRWGELSCISWMILNANEKNIGNAQYRRNWLEPGDQWYDENTLYFPEPALFNCTLEQQFYGGHSTFDAPAITREIADSGSWIFSREEIDAIWNQNSFIGCNMARGSNVQYKQFMSALFVALAPIWHKHEEQFLHIGGYDKRALAFIAERLITGMVLYRDKLFPGMNIATAPIGFIH*

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