Scaffold Ga0118729_1133952

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1133952
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042029	Metagenome / Metatranscriptome	159	Y
F103920	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_11339521	F103920	AGGA	MPTIKDNNNVVLFSDPFKVYLFKEEQLVKLSFKITDYVVVNREFSQEDFEYILDHWKEQDGVEGNIRDTDNNKYWWYHSKFGPRPECEPADFVGINFNRYSFRFSVKDMESLENAYFHQKNNKMHWD*
Ga0118729_11339522	F042029	N/A	NNSPMLHGESQAGEHWATYELDGKEIDHEPGPLGKIRVHDDYWNISDEDKEWYNYDVRNTMEISTEQLDGLLNLIKDKSIAILLHAQNYEDIWKWSRNLPVMMIRTSVDSWDGDIVSWAAREYNYLMEDDRNANYSDDDHSWPGVETIVDNFISKKKFNNGIYDEDSPHNHGDILLHQSQWSTLSGLNTLWNRVGIESPDQNWIHQYYEDFQHHQEINQELAKELTDAYNKRQQ*